#!/bin/bash --login
#
#PBS -l select=1
#PBS -l walltime=00:05:00
#PBS -A z19-cse
#PBS -N phmmer

cd $PBS_O_WORKDIR

export PATH=/home/y14/y14/$USER/hmmer/3.1b2/bin/phmmer:$PATH

aprun -n 1 phmmer --cpu 1 --noali -E 1e-100 -o P01024_mammals.out P01024.fasta uniprot_sprot_mammals.dat